go-db-query

cmungall/go-db

Skills for querying Gene Ontology annotation databases in DuckDB format. Use this for queries about GO annotations, genes, terms, evidence codes, or taxonomic relationships in GO-DB databases (db/*.ddb files). Particularly useful for hierarchical queries using closure tables to find genes annotated to terms and their descendants.

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Installation

Option 1: Use slash command in Claude Code

/install-skill https://github.com/cmungall/go-db/tree/main/skills/go-db-query

Option 2: Clone to skills directory

# Global (all projects)

git clone https://github.com/cmungall/go-db/tree/main/skills/go-db-query ~/.claude/skills/go-db

# Project-specific

git clone https://github.com/cmungall/go-db/tree/main/skills/go-db-query .claude/skills/go-db

Add MCP server to .cursor/mcp.json:

{
  "mcpServers": {
    "skillz": {
      "command": "npx",
      "args": ["-y", "skillz-mcp", "https://github.com/cmungall/go-db/tree/main/skills/go-db-query"]
    }
  }
}

Restart Cursor after adding the configuration.

Option 1: Use Gemini CLI command

gemini extensions install https://github.com/cmungall/go-db/tree/main/skills/go-db-query

Option 2: Clone to extensions directory

git clone https://github.com/cmungall/go-db/tree/main/skills/go-db-query ~/.gemini/extensions/go-db

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