Tools

Multi-role requirement analysis and task breakdown workflow using 4 specialized AI agents (PM, UX, Tech, QA). Each agent conducts web research before analysis to gather industry best practices, case studies, and current trends. Supports Quick Mode (parallel, ~3 min, one Q&A session) and Deep Mode (serial, ~8 min, Q&A after EACH agent so answers inform subsequent analysis). Triggers on 'foreman-spec', 'spec feature', 'break down requirement', 'define tasks', 'spec this'.

Comprehensive PDF manipulation toolkit for extracting text and tables, creating new PDFs, merging/splitting documents, and handling forms. When Claude needs to fill in a PDF form or programmatically process, generate, or analyze PDF documents at scale.

Comprehensive PR review for oc (OpenShift CLI). Runs build, tests, and linting, then applies Go style improvements and provides detailed code review feedback.

MUST invoke before creating any git commit. Provides commit message format and safety rules.

Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). Supports GRADE evidence grading, statistical analysis (hazard ratios, survival curves, waterfall plots), biomarker integration, and regulatory compliance. Outputs publication-ready LaTeX/PDF format optimized for drug development, clinical research, and evidence synthesis.

Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process: (1) create section outlines with key points using research-lookup, (2) convert to flowing prose. IMRAD structure, citations (APA/AMA/Vancouver), figures/tables, reporting guidelines (CONSORT/STROBE/PRISMA), for research papers and journal submissions.

Systematic peer review toolkit. Evaluate methodology, statistics, design, reproducibility, ethics, figure integrity, reporting standards, for manuscript and grant review across disciplines.

Access comprehensive LaTeX templates, formatting requirements, and submission guidelines for major scientific publication venues (Nature, Science, PLOS, IEEE, ACM), academic conferences (NeurIPS, ICML, CVPR, CHI), research posters, and grant proposals (NSF, NIH, DOE, DARPA). This skill should be used when preparing manuscripts for journal submission, conference papers, research posters, or grant proposals and need venue-specific formatting requirements and templates.

Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process: (1) create section outlines with key points using research-lookup, (2) convert to flowing prose. IMRAD structure, citations (APA/AMA/Vancouver), figures/tables, reporting guidelines (CONSORT/STROBE/PRISMA), for research papers and journal submissions.

Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties. Supports general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, and pain management. Includes SMART goal frameworks, evidence-based interventions with minimal text citations, regulatory compliance (HIPAA), and professional formatting. Prioritizes brevity and clinical actionability.

Decision rules for when to use MCP Qdrant-Indexer semantic search vs grep/literal file tools. Use this skill when starting exploration, debugging, or answering "where/why" questions about code.

Create a new release for the Hamr launcher with version bump, git tag, and push

Write, edit, and refactor code with full tool access - Use when you need to actually write or modify code, create files, run commands, or implement features.

Reverse engineer web APIs by capturing browser traffic (HAR files) and generating production-ready Python API clients. Use when the user wants to create an API client for a website, automate web interactions, or understand undocumented APIs. Activate on tasks mentioning "reverse engineer", "API client", "HAR file", "capture traffic", or "automate website".

Linear issue tracking integration - Create, update, and manage Linear issues and projects using the GraphQL API

Run comprehensive validation and review checks including heading numbering, TODO/FIXME comments, Nextflow script conventions, orphaned files, admonition syntax, lesson structure, formatting, content accuracy, and teaching effectiveness. Use when validating, reviewing, or checking training materials quality, lesson quality, or before committing changes.

Search markdown files, Nextflow scripts, and config files for TODO/FIXME comments, categorize by priority, and provide actionable recommendations. Use when you need to identify pending work or track technical debt.

Test a Nextflow script by running it, verifying outputs, testing resume functionality, and comparing results with documentation. Use when validating that example scripts work correctly and match their documentation.

Generate Wheels MVC controllers with CRUD actions, filters, parameter verification, and proper rendering. Use when creating or modifying controllers, adding actions, implementing filters for authentication/authorization, handling form submissions, or rendering views/JSON. Ensures proper Wheels conventions and prevents common controller errors.

Generate documentation comments, README files, and API documentation for Wheels applications. Use when documenting code, creating project READMEs, or generating API docs.