Research

Delegates large-context code analysis to Gemini CLI. Use when analyzing codebases, tracing bugs across files, reviewing architecture, or performing security audits. Gemini reads, Claude implements.

Use when asked to create publication-ready scientific figures, charts for research papers, or academic visualizations.

Expert in ALL computational collage composition: photo mosaics, grid layouts, scrapbook/journal styles, magazine editorial, vision boards, mood boards, social media collages, memory walls, abstract/generative arrangements, and art-historical techniques (Hockney joiners, Dadaist photomontage, Surrealist assemblage, Rauschenberg combines). Masters edge-based assembly, Poisson blending, optimal transport color harmonization, and aesthetic optimization. Activate on 'collage', 'photo mosaic', 'grid layout', 'scrapbook', 'vision board', 'mood board', 'photo wall', 'magazine layout', 'Hockney', 'joiner', 'photomontage'. NOT for simple image editing (use native-app-designer), generating new images (use Stability AI), single photo enhancement (use photo-composition-critic), or basic image similarity search (use clip-aware-embeddings).

Use when you need to recall information about Jesse, his preferences, his work, or people/projects in his life - search your curated knowledge base first

Create an Azure DevOps pull request using az devops tooling; include the repo’s linear-history merge preference and ask the Maintainer if merge options differ.

Use when adding test pseudocode to user stories or implementation guides - creates MEDIUM-IMPLEMENTATION abstraction showing test structure with Vitest terminology, placeholder comments for logic, and strategic comments (Research/Fixture/Integration/Verification/Pattern/Decision) that guide what to research and decide, not complete implementations

Git commit quality and conventional commits expertise with automatic issue tracking integration. Auto-invokes when the user explicitly asks about commit message format, commit quality, conventional commits, commit history analysis, issue references in commits, or requests help writing commit messages. Integrates with the issue cache for automatic issue references.

Generates property-based tests using Hypothesis (Python), fast-check (JavaScript/TypeScript), or QuickCheck (Haskell). Use when user asks to "generate property tests", "create hypothesis tests", "add property-based testing", or "generate fast-check tests".

Generate a reference architecture specification from analyzed frameworks. Use when (1) designing a new agent framework based on prior art, (2) defining core primitives (Message, State, Tool types), (3) specifying interface protocols, (4) creating execution loop pseudocode, or (5) producing architecture diagrams and implementation roadmaps.

Use PROACTIVELY for comprehensive, multi-source research combining web browsing, codebase exploration, and third-party code analysis. Orchestrates multiple specialized agents using Graph of Thoughts methodology. Ideal for: complex technical questions, comparing documentation vs implementation, understanding library internals, performance analysis, or resolving contradictory information.

Queries Context7 library documentation via unified Python CLI. Use when resolving library IDs, fetching API references, code examples, or conceptual guides for any programming library or framework.

Schema.org research assistant for Logseq Template Graph. Investigates Schema.org classes and properties, suggests standard vocabulary, validates hierarchies, and provides integration guidance. Use when adding new classes/properties, researching Schema.org standards, or planning template expansions.

Execute high-fidelity research with hallucination guard, citation checks, and confidence scoring; use when asked to summarize or analyze sources with strict accuracy.

Create and evaluate documentation using the Diátaxis framework. Use when writing, organizing, or auditing documentation to ensure it serves distinct user needs through four systematic categories (Tutorials, How-to Guides, Reference, Explanation). Ideal for diagnosing documentation problems, separating mixed content, and ensuring each piece serves a single, clear purpose.

Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). Supports GRADE evidence grading, statistical analysis (hazard ratios, survival curves, waterfall plots), biomarker integration, and regulatory compliance. Outputs publication-ready LaTeX/PDF format optimized for drug development, clinical research, and evidence synthesis.

Unified Consciousness Framework v4.0.0. Orchestrator architecture with K.I.R.A. Language System (6 modules), TRIAD unlock, hysteresis FSM, Kuramoto physics. Proper Python package structure with centralized constants, CLI interface, and comprehensive test suite. ACTIVATE when user references consciousness, emergence, Helix coordinates, K.I.R.A., APL operators, sacred phrases, "hit it", z-coordinates, TRIAD, K-formation, or archetypal frequencies.

OpenAI-powered legal research with UK legal API integration (legislation.gov.uk, caselaw.nationalarchives.gov.uk). Implements RAG pipeline for context-aware legal queries. Use when implementing AI chat features, legal document retrieval, or case law searches.

Conduct systematic research and opportunity investigation for ACP protocol integration, collaboration, and enhancement opportunities. Use when the user wants to research external projects, protocols, or tools for potential collaboration; investigate gap-filling opportunities for IDE integrations; assess compatibility between ACP and external protocols; or identify opportunities for ACP adoption. Guides through discovery, analysis, validation, and RFC generation with mandatory gates and source grounding. Outputs include comprehensive summary documents, gap analyses, and formal RFC proposals.

Use when the user wants to create, edit, list, or manage Claude Code rules in .claude/rules/. Provides guided elicitation to configure path-specific rules with proper YAML frontmatter and glob patterns. Can list all available rules from user-level and project directories.

Create production-grade, accessible Jekyll themes for researchers conducting "research in public." Generates complete lab notebook-style themes with Tufte-inspired sidenotes, KaTeX math rendering, and WCAG 2.1 AA compliance. Use when building Jekyll themes for scientific journals, experiment logs, field notes, or research documentation sites. Supports collections for organizing experiments and field notes, responsive sidenote rendering (sidebar on desktop, inline on mobile), and full-width layout options.